Difference between revisions of "Introductory reading"

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This is a list of entries to the vastly growing literature in the field of topological data analysis, both from a theoretical and an applied point of view.
 
This is a list of entries to the vastly growing literature in the field of topological data analysis, both from a theoretical and an applied point of view.
  
== Literature for Mathematicians ==
+
== Literature on theory ==
  
 
A well-known theoretical introduction to the field. Carlsson: ''Topology and Data''.<ref>CARLSSON, Gunnar. Topology and data. ''Bulletin of the American Mathematical Society'', 2009, 46. Jg., Nr. 2, S. 255-308. [https://doi.org/10.1090/S0273-0979-09-01249-X doi:10.1090/S0273-0979-09-01249-X]</ref>  
 
A well-known theoretical introduction to the field. Carlsson: ''Topology and Data''.<ref>CARLSSON, Gunnar. Topology and data. ''Bulletin of the American Mathematical Society'', 2009, 46. Jg., Nr. 2, S. 255-308. [https://doi.org/10.1090/S0273-0979-09-01249-X doi:10.1090/S0273-0979-09-01249-X]</ref>  
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A recently introduced topological summary better suited than persistence diagrams to statistically analyze persistent homology, the persistence landscape. Bubenik: ''Statistical topological data analysis using persistence landscapes.''<ref>BUBENIK, Peter. Statistical topological data analysis using persistence landscapes. ''The Journal of Machine Learning Research'', 2015, 16. Jg., Nr. 1, S. 77-102. http://www.jmlr.org/papers/volume16/bubenik15a/bubenik15a.pdf</ref>
 
A recently introduced topological summary better suited than persistence diagrams to statistically analyze persistent homology, the persistence landscape. Bubenik: ''Statistical topological data analysis using persistence landscapes.''<ref>BUBENIK, Peter. Statistical topological data analysis using persistence landscapes. ''The Journal of Machine Learning Research'', 2015, 16. Jg., Nr. 1, S. 77-102. http://www.jmlr.org/papers/volume16/bubenik15a/bubenik15a.pdf</ref>
  
== Literature for Computer Scientists ==
+
== Literature towards applications ==
 
A thorough introduction to the field and approaches of computational topology. Edelsbrunner and Harer: ''Computational topology: an introduction''.<ref>EDELSBRUNNER, Herbert; HARER, John. ''Computational topology: an introduction''. American Mathematical Soc., 2010. </ref>
 
A thorough introduction to the field and approaches of computational topology. Edelsbrunner and Harer: ''Computational topology: an introduction''.<ref>EDELSBRUNNER, Herbert; HARER, John. ''Computational topology: an introduction''. American Mathematical Soc., 2010. </ref>
  
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The mapper algorithm. Singh et al: ''Topological methods for the analysis of high dimensional data sets and 3d object recognition.''<ref>SINGH, Gurjeet; MÉMOLI, Facundo; CARLSSON, Gunnar E. Topological methods for the analysis of high dimensional data sets and 3d object recognition. In: ''SPBG''. 2007. S. 91-100. [http://dx.doi.org/10.2312/SPBG/SPBG07/091-100 doi:10.2312/SPBG/SPBG07/091-100]</ref>
 
The mapper algorithm. Singh et al: ''Topological methods for the analysis of high dimensional data sets and 3d object recognition.''<ref>SINGH, Gurjeet; MÉMOLI, Facundo; CARLSSON, Gunnar E. Topological methods for the analysis of high dimensional data sets and 3d object recognition. In: ''SPBG''. 2007. S. 91-100. [http://dx.doi.org/10.2312/SPBG/SPBG07/091-100 doi:10.2312/SPBG/SPBG07/091-100]</ref>
 
== Literature for Physicists ==
 
Starting with a topological primer, the computational setup is described and applied to immensely large structures present in our universe: the cosmic web. Pranav et al: ''The Topology of the Cosmic Web in Terms of Persistent Betti Numbers''.<ref>PRANAV, Pratyush, et al. The topology of the cosmic web in terms of persistent Betti numbers. ''Monthly Notices of the Royal Astronomical Society'', 2016, 465. Jg., Nr. 4, S. 4281-4310. [https://doi.org/10.1093/mnras/stw2862 doi:10.1093/mnras/stw2862]</ref>
 
 
== Literature for Biologists ==
 
  
 
== References ==
 
== References ==
 
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Latest revision as of 16:16, 20 May 2019

This is a list of entries to the vastly growing literature in the field of topological data analysis, both from a theoretical and an applied point of view.

Literature on theory

A well-known theoretical introduction to the field. Carlsson: Topology and Data.[1]

One of the papers introducing the notion of persistent homology of a filtration. Zomorodian and Carlsson: Computing persistent homology.[2]

A recently introduced topological summary better suited than persistence diagrams to statistically analyze persistent homology, the persistence landscape. Bubenik: Statistical topological data analysis using persistence landscapes.[3]

Literature towards applications

A thorough introduction to the field and approaches of computational topology. Edelsbrunner and Harer: Computational topology: an introduction.[4]

A general overview of persistent homology with an eye towards applications of different numerical libraries. In the supplementaries starting points for own numerical steps are given. Otter et al: A roadmap for the computation of persistent homology.[5]

The mapper algorithm. Singh et al: Topological methods for the analysis of high dimensional data sets and 3d object recognition.[6]

References

  1. CARLSSON, Gunnar. Topology and data. Bulletin of the American Mathematical Society, 2009, 46. Jg., Nr. 2, S. 255-308. doi:10.1090/S0273-0979-09-01249-X
  2. ZOMORODIAN, Afra; CARLSSON, Gunnar. Computing persistent homology. Discrete & Computational Geometry, 2005, 33. Jg., Nr. 2, S. 249-274. doi:10.1007/s00454-004-1146-y
  3. BUBENIK, Peter. Statistical topological data analysis using persistence landscapes. The Journal of Machine Learning Research, 2015, 16. Jg., Nr. 1, S. 77-102. http://www.jmlr.org/papers/volume16/bubenik15a/bubenik15a.pdf
  4. EDELSBRUNNER, Herbert; HARER, John. Computational topology: an introduction. American Mathematical Soc., 2010.
  5. OTTER, Nina, et al. A roadmap for the computation of persistent homology. EPJ Data Science, 2017, 6. Jg., Nr. 1, S. 17. doi:10.1140/epjds/s13688-017-0109-5
  6. SINGH, Gurjeet; MÉMOLI, Facundo; CARLSSON, Gunnar E. Topological methods for the analysis of high dimensional data sets and 3d object recognition. In: SPBG. 2007. S. 91-100. doi:10.2312/SPBG/SPBG07/091-100