List of Software

In recent years, a whole landscape of software emerged that deals with computational topology tasks in different fashions. On this page, we provide starting points for the selection of software suited for the problem of interest. This collection has been created without any claim of comprehensiveness.

Packages described here include:

• CGAL (https://www.cgal.org/)
• JavaPlex (https://github.com/appliedtopology/javaplex), Tutorial
• GUDHI (http://gudhi.gforge.inria.fr/)
• Ripser (https://github.com/Ripser)
• PHAT (https://github.com/blazs/phat)
• Dionysus (http://www.mrzv.org/software/dionysus)
• R-TDA (https://cran.r-project.org/web/packages/TDA/index.html)
• Persus (http://www.sas.upenn.edu/~vnanda/perseus/index.html)
• Rivet (http://rivet.online/)

Overview

Comparison of some of these packages e.g. by Otter et al. . Eventually we will put put the results of this comparison in a table somewhere on this page.

Details

JavaPlex

We provide an introductory tutorial to Javaplex on a different page.

GUDHI

We provide an introductory tutorial to using GUDHI on a different page.