Difference between revisions of "List of Software"
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In recent years, a whole landscape of software emerged that deals with computational topology tasks in different fashions. On this page, we provide starting points for the selection of software suited for the problem of interest. This collection has been created without any claim of comprehensiveness. | In recent years, a whole landscape of software emerged that deals with computational topology tasks in different fashions. On this page, we provide starting points for the selection of software suited for the problem of interest. This collection has been created without any claim of comprehensiveness. | ||
| − | Packages described here include: | + | Packages described here include the following: |
*CGAL (https://www.cgal.org/) | *CGAL (https://www.cgal.org/) | ||
*JavaPlex (https://github.com/appliedtopology/javaplex), [[JavaPlex Tutorial| Tutorial]] | *JavaPlex (https://github.com/appliedtopology/javaplex), [[JavaPlex Tutorial| Tutorial]] | ||
Revision as of 20:38, 17 May 2019
In recent years, a whole landscape of software emerged that deals with computational topology tasks in different fashions. On this page, we provide starting points for the selection of software suited for the problem of interest. This collection has been created without any claim of comprehensiveness.
Packages described here include the following:
- CGAL (https://www.cgal.org/)
- JavaPlex (https://github.com/appliedtopology/javaplex), Tutorial
- GUDHI (http://gudhi.gforge.inria.fr/)
- Ripser (https://github.com/Ripser)
- PHAT (https://github.com/blazs/phat)
- Dionysus (http://www.mrzv.org/software/dionysus)
- R-TDA (https://cran.r-project.org/web/packages/TDA/index.html)
- Persus (http://www.sas.upenn.edu/~vnanda/perseus/index.html)
- Rivet (http://rivet.online/)
Overview
Comparison of some of these packages e.g. by Otter et al. [1]. Eventually we will put put the results of this comparison in a table somewhere on this page.
Details
CGAL
JavaPlex
We provide an introductory tutorial to Javaplex on a different page.
GUDHI
We provide an introductory tutorial to using GUDHI on a different page.
Ripser
PHAT
Dionysus
R-TDA
Persus
Rivet
References
- ↑ Otter, Nina, et al. A roadmap for the computation of persistent homology. EPJ Data Science, 2017, 6. Jg., Nr. 1, S. 17. doi:10.1140/epjds/s13688-017-0109-5